Instructor Notes

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Introduction


Genetic Drivers of Pancreatic Islet Function


Load and Explore Data


Mapping A Single Gene Expression Trait


Instructor Note

The students don’t have to type the next block. You can show the plot in the lesson or type it to show the plot live.



Instructor Note

Show this in the lesson website. Don’t type all of this out or have the students type it either.



Instructor Note

Show this in the lesson website. Don’t type all of this out or have the students type it either.



Instructor Note

We load in kinship at the top of the lesson to build the website. This will take the students a while to build.



Instructor Note

This takes about 15 to 30 seconds.



Instructor Note

You don’t have to have the students type out the legend and title code. Also, use “red3” instead of “rgb(0.8, 0, 0, 0.5)”.



Instructor Note

This takes 40 minutes to run. Have the students read in the pre-computed results.



Instructor Note

This takes 10 minutes to run. Have the students read in the pre-computed results.



Mapping Many Gene Expression Traits


Maximum eQTL Peaks and Nearby Genes


Creating A Transcriptome Map


Mediation Analysis